Bioinformatics Analyst (NGS / Genomics) Job at Pharmaceutical Company, South San Francisco, CA

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  • Pharmaceutical Company
  • South San Francisco, CA

Job Description

We are hiring a Bioinformatics Analyst to support a global genomics initiative focused on expanding diverse genetic datasets. This role involves building and operating bioinformatics pipelines for long-read sequencing and methylation data , with a strong focus on data quality, reproducibility, and collaboration across international teams.

You will work closely with cross-functional scientists and global partners to ensure smooth data processing, accurate reporting, and scalable pipeline operations.

Key Responsibilities

  • Develop and maintain bioinformatics pipelines for long-read sequencing (ONT) and methylation data
  • Process raw sequencing data, perform QC checks , and identify data anomalies
  • Execute workflows for variant calling and genomic data analysis
  • Manage data ingestion and ensure efficient data flow across systems
  • Maintain documentation for pipelines, QC metrics, and code using git
  • Collaborate with global teams (including Africa-based teams) for data coordination
  • Support continuous improvement of data processing workflows

Required Qualifications

  • Bachelor’s or Master’s in Bioinformatics, Computational Biology, or related field
  • 2+ years of hands-on experience in bioinformatics / genomics
  • Strong experience with NGS pipelines and WGS data
  • Proficiency in Python and Bash scripting
  • Experience with HPC or cloud platforms (AWS)
  • Familiarity with Oxford Nanopore (ONT) or long-read sequencing data
  • Experience with workflow tools like Nextflow or Snakemake
  • Strong communication skills and ability to work across time zones

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